PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00450g00422.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 221aa    MW: 24713.6 Da    PI: 6.1387
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00450g00422.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.84.4e-3010972102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++de+++++isw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+Y    +  ++         weF++++F
  Peaxi162Scf00450g00422.1  10 FLTKTYQLVDDETTDDVISWNESGTTFVVWKTAEFAKDLLPQYFKHNNFSSFVRQLNTY----IVPDK---------WEFANENF 81 
                               9**********************************************************....34444.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               k+++kell+ i+r+k+
  Peaxi162Scf00450g00422.1  82 KREQKELLTAIRRRKT 97 
                               *************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-32389IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-50695IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.9E-30795IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.2E-161033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-261095IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-164860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSQRTVPAPF LTKTYQLVDD ETTDDVISWN ESGTTFVVWK TAEFAKDLLP QYFKHNNFSS  60
FVRQLNTYIV PDKWEFANEN FKREQKELLT AIRRRKTVTA TPAGGKSVAP GTSASPDNSG  120
EDLGSSSTSS PDSKNPGSVE TPGKSQFADL SDENEKLRKD NQMLSSELAH TKKQCDELVA  180
FLNQHMKVGP DMIDSNGKMM KTMDFNAPWM RMSSVHGESS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-2169726131Heat shock factor protein 1
5d5v_B2e-2169726131Heat shock factor protein 1
5d5u_B2e-2169726131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797839.11e-122PREDICTED: heat shock factor protein HSF24
RefseqXP_016491218.11e-122PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-115HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLQ9SXK91e-121Q9SXK9_TOBAC; Heat shock factor
STRINGPGSC0003DMT4000102941e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-74heat shock factor 4